Except most of the time, that scenario doesn't happen. Like I said, I've never had an issue, to this point. How many GoDaddy auctions has this happened to you?
And then, bids are legally binding, so most people follow thru. I guess you're saying those 2 are working together, the $1000 bidder and the $100 bidder? It literally takes under a minute to setup another auction, coupled with the fact, this rarely happens. And what you're describing can happen at other auction places as well. So, not a big deal.
And not sure what you mean by "before godaddy screw up their system anymore"
The system works pretty smoothly. Only negative thing I can think of is they can work on getting the payouts faster.